Transfer novoSpaRc mapping results back to the atlas

Working directory should contain root atlas Seurat object, which is available on GEO under record GSE152766:

Root_Atlas.rds (or get it by running through notebook 2)

Working directory must contain subdirectories,supp_data

supp_data/ should contain the file:

SCT_dge_50k.txt (get it by using the same method as in notebook 4-1)
cell_to_local_index_50k_49markers.txt (get it by running through notebook 3-1)
geometry_arabidopsis_root_binarized.txt
color_scheme_at.RData

novoSpaRc mapping for Columella

novoSpaRc mapping for Lateral Root Cap

Output